added some empty folders for plots, tables and metrics

TextClustering/cluster_metrics/.gitignore

+# Ignore everything in this directory
+*
+# Except this file
+!.gitignore
\ No newline at end of file

TextClustering/clustering_pipeline.py

@@ -11,19 +11,6 @@ if not workdir[-len('nlp-in-diagnostic-texts-from-nephropathology'):] == 'nlp-in
     print("please make shure to run this script with working directory '.../path/to/nlp-in-diagnostic-texts-from-nephropathology'.")
     exit(1)
 
-# add some folders for metrics, plot, tables etc:
-if not os.path.isdir('TextClustering/cluster_metrics'):
-    os.makedirs('TextClustering/cluster_metrics')
-if not os.path.isdir('TextClustering/tables'):
-    os.makedirs('TextClustering/tables')
-if not os.path.isdir('TextClustering/plots'):
-    os.makedirs('TextClustering/plots')
-if not os.path.isdir('TextClustering/plots/histograms'):
-    os.makedirs('TextClustering/plots/histograms')
-if not os.path.isdir('TextClustering/plots/UMAP'):
-    os.makedirs('TextClustering/plots/UMAP')
-if not os.path.isdir('TextClustering/plots/PCA'):
-    os.makedirs('TextClustering/plots/PCA')
 
 # Construct clustering pipeline. This is a suggestion how to use all the scripts.
 # I also recommend to run each clustering script one by on to fintune the clusterings (with argument --find_k_value)

TextClustering/plots/PCA/.gitignore

+# Ignore everything in this directory
+*
+# Except this file
+!.gitignore
\ No newline at end of file

TextClustering/plots/UMAP/.gitignore

+# Ignore everything in this directory
+*
+# Except this file
+!.gitignore
\ No newline at end of file

TextClustering/plots/histograms/.gitignore

+# Ignore everything in this directory
+*
+# Except this file
+!.gitignore
\ No newline at end of file

TextClustering/tables/.gitignore

+# Ignore everything in this directory
+*
+# Except this file
+!.gitignore
\ No newline at end of file